Showing : mass spectrometry • reset
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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
written 5.1 years ago by ★ 2.1k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
6.0 years ago shepherl 4.2k
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Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
6.1 years ago wang.lingjue • 0
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Scans vs Spectra
mass spectrometry mzr/ msnbase
7.5 years ago Ed Siefker ▴ 230
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Thermo Xcalibur RAW data to MGF
mass spectrometry massspectrometry
updated 7.6 years ago by 1.6k • written 7.6 years ago by ▴ 10
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R function to deconvolve ESI MS spectra of multiple charge large biopolymers
mass spectrometry R mzR
7.6 years ago andreas.breidbach • 0
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MAIT or Specmine
metabolomics mait specmine mass spectrometry
8.1 years ago bhgyu ▴ 30
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
8.5 years ago • updated 8.4 years ago Laurent Gatto 1.6k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics mass spectrometry biostatistics News
8.8 years ago Laurent Gatto 1.6k
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News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics tutorial mass spectrometry computational biology News
9.8 years ago Olga Vitek ▴ 40
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Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
9.9 years ago Titan • 0
11 results • Page 1 of 1
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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